The best nonprofit accounting software is capable of addressing the specific needs of a nonprofit organization, such as filing Form 990, adhering to Financial Accounting Standards Board rules and guidelines, tracking grants, managing restricted funds, and facilitating online donations.
To help you make an informed decision, we have thoroughly tested the top accounting software solutions for nonprofits.
The Best Accounting Software for Nonprofits
- FreshBooks – Best Cloud Accounting for Nonprofits
- Zoho Books – Best for Multi-Currency Support
- Xero – Best for Comprehensive Reporting
- QuickBooks – Best for Nonprofit Cash Flow Management
- Wave – Best Free Accounting for Nonprofits
- Melio – Best for Online Payment Solutions
- Blackbaud – Best to Track Donations for Nonprofits
- Bonsai – Best for Project Collaboration and Time Tracking
- Sage – Best for Multinational Nonprofits
- Oracle NetSuite – Best for Complex & Customized Accounting
- Show Full Guide
The Best Accounting Software for Nonprofit Organizations Reviewed
To ensure fair and accurate analysis, we test each accounting software based on price, value for money, features, ease of use, automation, and third-party reviews. Check out our “How we test” section below for more details.
1. FreshBooks – Best Cloud-Based Accounting
Best For | Cloud-based software for nonprofit accounting |
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Free Trial | Yes, 30 days free trial |
Price From | Starting from $19/month (plus 50% off for the first 6 months) |
Top 3 Features | Customizable Invoices and Emails, Recurring Donations, Time Tracking |
Pros
- Simple and easy-to-use platform
- Customizable invoices and emails for donations
- Integrated project planning tools
- Flexible integration with donation/fundraising platforms
Cons
- Integrations incur a small fee
- Limited user support on each plan
- Scalability concern for your nonprofit organization
Read our full FreshBooks review
2. Zoho Books – Best for Multi-Currency Support
Best For | Multi-currency support |
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Free Trial | Yes, 14 days free trial and free plan |
Price From | Starting from $15/month |
Top 3 Features | International Payments, Easy Collaboration, Donation Management |
Pros
- Variety of payment options and supported currencies
- Advanced project management functionality
- Fixed asset management integration available
- 15% discount for registered charities, trusts, and societies
Cons
- Steeper learning curve because of its multiple features
- Lack of API support in the free plan
- Many users complained of delayed response from the customer service team
3. Xero – Best for Comprehensive Reporting
Best For | Comprehensive reporting |
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Free Trial | Yes, 30 days free trial |
Price From | Starting from $3.75/month |
Top 3 Features | Expense Tracking, Automatic Bank Reconciliation, Online Payments |
Pros
- In-depth expense monitoring with automatic bank feeds
- Advanced integration support
- Comprehensive reporting
- 25% discount for registered charities and nonprofits
Cons
- No fund restrictions or grant management
- Feature limitations with the basic plan
- Invoicing performs best with max 2,000 invoices/month
4. QuickBooks – Best for Nonprofit Cash Flow Management
Best For | Cash flow management |
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Free Trial | Yes, 30 days free trial |
Price From | Starting from $15/month |
Top 3 Features | Expense Tracking, Financial Reports, Vendor and Donor Management |
Pros
- Custom rules for expense tracking and categorization
- Free 30 days offer for Live Expert Assisted
- Easy to accept donations
- Accessible communication with donors and vendors
Cons
- Workflow automation is only available on the highest tier
- Advanced budget tracking is only available on higher tiers
- Limited users in each plan
- Lack of forever free plan
Read our full Quickbooks review
5. Wave – Best Free Accounting for Nonprofits
>Best For | Free accounting software for nonprofits |
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Free Trial | Free plan |
Price From | Starting from $16/month |
Top 3 Features | Free Accounting and Expense Tracking, Effortless Bank Reconciliation, Tax Filing |
Pros
- Free accounting features for nonprofits of all sizes
- Unlimited free bank connections
- Mobile access and easy receipt scanning
- Expense categorization and one-click financial reports
Cons
- Payment fees for every transaction
- Limited scalability with businesses
- Adding extra users is only available to the paid plan
6. Melio – Best for Online Payments Solution
Best For | Online payments solution |
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Free Trial | Yes, Start for free |
Price From | Fixed fees for payments, ranging from $1.50 to 2.9% of the invoice |
Top 3 Features | Free ACH Bank Transfers, Handling Vendor Payments, Accounting Software Synchronization |
Pros
- Free signup with zero fees for ACH Bank Transfers
- Split bills into multiple payments and payment methods
- There is no signup fee for your vendors
- Seamlessly syncs with accounting solutions like Xero and QuickBooks
Cons
- It doesn’t offer a full accounting feature
- Integrations limit
- Customer service could be better
7. Blackbaud – Best to Track Donations for Nonprofits
Best For | Customizable donation tracking and support |
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Free Trial | Demo |
Price From | Quote-based |
Top 3 Features | Tracking Key Fundraising Metrics, Maintaining FASB Compliance, Advanced Fund Accounting |
Pros
- Facilitates fundraising through ticketing, marketing, and nonprofit CRM management
- Simplifies fund accounting with fund restrictions
- Easy management of unique financial report requirements
- Fully customizable according to your needs and the type of nonprofit
Cons
- Lack of transparent price plan
- Steep learning curve due to the advanced features
- It can be expensive
8. Bonsai – Best for Project Collaboration and Time Tracking
Best For | Project collaboration and time tracking |
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Free Trial | Yes, 7 days free trial |
Price From | Starting from $21/month |
Top 3 Features | Customizable Invoices, Project Management, and Time Tracking |
Pros
- Wide variety of customizable invoice templates
- Client and donor management
- Ability to set up recurring invoices for top donors to contribute each month
- Advanced project management software
Cons
- Lacks fund restriction and donor management tools
- Can’t allocate separate budgets to different projects
- Lack of forever free plan
- The cost of subscription fees may be a concern for nonprofits with tight budgets
9. Sage – Best for Multinational Nonprofits
Best For | Multinational nonprofits |
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Free Trial | Yes, 30 days free trial |
Price From | Starting from $11/month |
Top 3 Features | Expense Tracking and Financial Reporting, Nonprofit Revenue Recognition |
Pros
- Improved financial visibility
- Role-based dashboards
- Real-time expense tracking and reporting
- Custom solutions for niche-specific nonprofits
Cons
- Lacks time-tracking
- The interface may be too advanced for a beginner
- Setting up Sage may be time-consuming
- Very expensive in terms of the standard number of users supported
10. Oracle NetSuite – Best for Complex & Customized Accounting Needs
Best For | Complex & customized accounting needs |
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Free Trial | No |
Price From | Custom-based |
Top 3 Features | Fund and Grant Accounting, Real-time Reporting, Program Efficiency Tracking |
Pros
- Comprehensive finance and accounting features
- Modules for enterprise resource planning (ERP) and CRM
- Automated FASB reporting
- Simplified financial segmentation for granular visibility
- Advanced program efficiency tracking
Cons
- Steep learning curve – requires considerable experience
- It can be expensive for small nonprofits
- Complex integration process
- Advanced Modules can incur more expenses
The Best Nonprofit Accounting Software Compared
Here’s a quick side-by-side comparison of the best software for nonprofit accounting so you can compare the key features.
Accounting Software | Best For | Free Trial | Starting Price | Top Features |
---|---|---|---|---|
FreshBooks | Cloud-based Accounting | Yes, 30 days free trial | $19/month | Customizable Invoices and Emails, Recurring Donations, Time Tracking |
Zoho | Multi-Currency Support | Yes, 14 days free trial and free plan | $15/month | International Payments, Easy Collaboration, Donation Management |
Xero | Comprehensive Reporting | Yes, 30 days free trial | $3.75/month | Expense Tracking, Automatic Bank Reconciliation, Online Payments |
QuickBooks | Cash Flow Management | Yes, 30 days free trial | $15/month | Expense Tracking, Financial Reports, Vendor and Donor Management |
Wave | Free Accounting | Free plan | $16/month | Free Accounting and Expense Tracking, Effortless Bank Reconciliation, Tax Filing |
Melio | Online Payments Solution | Yes, Start for free | $1.50 | Free ACH Bank Transfers, Handling Vendor Payments, Accounting Software Synchronization |
Blackbaud | Donation Tracking | Demo | Quote-based | Tracking Key Fundraising Metrics, Maintaining FASB Compliance, Advanced Fund Accounting |
Bonsai | Project Collaboration and Time Tracking | Yes, 7 days free trial | $21/month | Customizable Invoices, Project Management and Time Tracking |
Sage | Multinational Nonprofits | Yes, 30 days free trial | $11/month | Expense Tracking and Financial Reporting, Nonprofit Revenue Recognition |
Oracle NetSuite | Complex & Customized Accounting | No | Custom-based | Fund and Grant Accounting, Real-time Reporting, Program Efficiency Tracking |
To provide our readers with accurate and well-informed recommendations, we test the most popular accounting products on the market to find the best options for you. Our methodology consists of the following criteria:How We Review and Test Accounting Products
What is Nonprofit Accounting Software?
Nonprofit accounting software has specific features designed to meet the unique needs of nonprofit organizations, such as fund accounting, grant management, budgeting, donor management, etc.
Nonprofit accounting involves recording, analyzing financial performance, and communicating financial activities within organizations dedicated to a specific mission or cause. Most nonprofits’ accounting activities include managing grants, tracking donations, and complying with tax regulations applicable to tax-exempt entities (such as Form 990 filing).
Maintaining accurate financial records is crucial to ensure transparency, accountability, and donor trust. This is why nonprofits need to use specialized accounting software designed to meet their unique needs and provide comprehensive insight into their finances.
Benefits of Using Nonprofit Accounting Software
Nonprofit organizations usually face distinct financial management issues, such as transparency, fund tracking, and complex reporting requirements. Therefore, nonprofit accounting software can enhance organizations' efficiency, accuracy, and overall financial management.
Below are other benefits of using nonprofit accounting software.
Accurate Reporting
Most accounting software allows report creation flexibility, allowing nonprofits to create detailed financial reports tailored to their specific needs.With the automated calculations of nonprofit accounting software, there will be minimal data entry error and team members can be sure of an accurate report.
Compliance with Financial Regulations
Similarly to most businesses, nonprofits must adhere to specific finance/accounting regulations.However, with the built-in compliance features of nonprofit accounting software, you can ensure accurate adherence to rules and standards, protecting your organization from penalties.
Finance Data Transparency
Accounting software is mainly cloud-based, which makes data available everywhere and on any device.When you use nonprofit accounting software, you and your team members will be able to access financial data and dashboards in real-time, improving transparency and making it easier to track audit trails of every financial transaction.
Scalability
It is common for businesses to grow with time. Therefore, as your nonprofit organization grows, using accounting software that will adapt to your needs and grow with you is important.While scalability might require extra time and effort if you use traditional accounting processes, modern cloud-based accounting software will help you scale and save time.
For-profit vs Non-profit Accounting Software
While both for-profit and nonprofit organizations require accounting software to manage their financial processes, their needs and priorities differ.
The best for-profit accounting software typically focuses on features like profit tracking, inventory management, payroll services, and tax optimization to enhance revenue generation and profitability.
Nonprofit accounting software, however, focuses more on functionalities such as donation management, grant reports, and compliance with tax-exempt regulations. It prioritizes transparency, accountability, and donor relations over maximizing profit.
As a result, accounting and bookkeeping software for nonprofits is tailored to address the unique requirements and reporting obligations of tax-exempt entities, ensuring efficient resource management and alignment with their objectives.
How to Choose the Best Nonprofit Accounting Software
When it comes to choosing the best accounting software for your nonprofit organization, there are quite a few things to pay attention to as nonprofit organization needs differ. Here’s a quick rundown of the key factors you should consider when comparing different providers:
It’s always best to opt for software for nonprofit accounting that lets you pay your vendors in a variety of different ways and allows you to accept donations from all over the world. So, look for one that supports payment flexibility, such as credit and debit cards, direct bank transfers, and payments via online payment processing services.
Choose an accounting solution that will easily integrate with the existing third-party apps you’ve been using to track your programs and initiatives, share information with your stakeholders, and manage your employees and volunteers. This is important so you have access to all the valuable data in one place.
Review the software price plans with its feature upgrades and the number of users supported on each price plan. This is because as your nonprofit grows, you’ll likely need to add more users, vendors, donors, and possibly even volunteers to the platform, so it’s best to choose a solution that doesn’t enforce limits to the number of users or can be easily upscaled to a higher subscription tier.
Keep in mind that software will be an additional monthly expense for your nonprofit, so carefully assess your budget. When going over the pricing plans of different accounting tools, make sure you fully understand what’s included with each package so you don’t end up paying a lot more than you expected due to add-ons and fees.
Don’t just opt for generic accounting software. Instead, look for financial software for nonprofits that offers specific features your organization will benefit from, such as fund restrictions, grant requirements management, expense categorization, program management, and financial reporting.
Consider the software security measures such as automatic backups, access controls, data encryption, multi-factor authentication, etc. Also understand the software compliance with relevant data privacy regulations and nonprofit tax requirements.
It’s important to understand the reputation of software before you entrust your organization details to them. Read the software’s long-time users’ reviews to understand their experiences and satisfaction with the software.
You do not want software with sluggish customer support responses. Evaluate the channel of support and working hours to see if it will match your needs. Customer support is important in cases where you need help with troubleshooting a technical issue.